Vision Lectures I and II
Ralph M. Siegel
February 3, 2000
1 The main issues this semester............................................................................................................................. 1
2 The case of the colorblind painter by Oliver Sacks....................................................................... 2
3 Retina.................................................................................................................................................................................. 3
3.1 Phototransduction and
information processing in the retina ............................................ 3
3.1.1 Structure of the eye............................................................................................................................................... 3
3.1.1.1 Pigment epithelium.............................................................................................................................................. 3
3.1.2 Photoreceptors - rods (night vision) and cones (color vision)................................................................... 4
3.1.2.1.1 Perceptual differences............................................................................................................................... 6
3.1.2.1.2 do not fire action potentials, unique neuronal property........................................................................... 7
3.1.2.1.3 structure of a rod/cone -............................................................................................................................ 7
3.1.2.2 Phototransduction -............................................................................................................................................. 8
3.1.2.2.1 Detail 1 - Rods.......................................................................................................................................... 8
3.1.2.2.2 Detail 2 - Cones........................................................................................................................................ 8
3.1.2.2.3 So turn this mess into neural activity!...................................................................................................... 8
3.1.2.2.4 What does the cGMP do?........................................................................................................................ 9
3.1.2.2.5 And what about the membrane potential (safe ground at last)............................................................... 13
3.1.2.2.6 Light adaptation - mediated via Ca++.................................................................................................... 18
3.2 Laminar structure.............................................................................................................................................. 22
3.2.1 Four layers -........................................................................................................................................................ 23
3.2.2 All these neurons are essentially interneurons and shapes the electrical signal en route to the optic nerve - lateral and direct pathways.................................................................................................................................................................. 31
3.2.2.1 Bipolar cells....................................................................................................................................................... 40
3.2.2.2 Horizontal cells................................................................................................................................................. 49
3.2.2.3 Bipolar cells activate ganglion cells................................................................................................................... 53
3.2.2.3.1 Amacrine cells......................................................................................................................................... 56
3.2.2.4 Ganglion cells.................................................................................................................................................... 58
3.2.3 Log transform of light (dim to bright)............................................................................................................ 66
3.3 Color............................................................................................................................................................................. 67
4 Lateral geniculate nucleus and other projection zones of retina.................................. 70
4.1 Projection zones of
the ganglion cells................................................................................................. 71
5 Optic Chiasm - split field representation.............................................................................................. 76
6 LGN - Parvo/magnocellular laminations.............................................................................................. 77
7 Primary visual cortex......................................................................................................................................... 85
7.1 Retinotopic map - 2DG
studies........................................................................................................................ 86
7.2 basic summary of
circuits............................................................................................................................. 88
7.3 properties of neurons
in V1............................................................................................................................. 95
7.4 Development of ocular
dominance- Wiesel's work..................................................................... 138
7.5 Laminar structure............................................................................................................................................ 138
7.5.1 The end-stopping story................................................................................................................................... 138
8 V2........................................................................................................................................................................................ 139
8.1 Functional
architecture.............................................................................................................................. 140
8.2 Different properties
in the stripes.......................................................................................................... 140
9 Extra-striate cortex (pre-striate, circumstriate)....................................................................... 140
9.1 Two or three pathways
-............................................................................................................................... 140
9.2 Some visual functions..................................................................................................................................... 141
10 Siegel Questions for Vision Lecture......................................................................................................... 142
What does it mean to be
conscious?
What am I?
How do you understand me?
One can duck these issues and study simpler systems, such as a duck, or a snail. However, these questions have always driven me in my professional life. I have always wanted to ask questions as bad as this. Yet we all know that all you need is some beer and you can do much good work on these questions.
The question of levels arises.
Which is the best level to really understand these issues? Of course, we all know that no one level is best
The visual system is a good system since multi-level explanations are available. Start at the retina and work inward in two lectures.
1. Retina
2. Lateral geniculate nucleus and projection zones
3. Striate cortex
4. Extrastriate cortex
A framework for studying principles of brain function.
|
Define a cognitive deficit
that is interesting |
Cerebral achromatopsia |
|
Determine the context of the problem |
Verry |
|
Suggest what structures |
Homologue of V4/blobs/magnocellular |
|
Provide a workable hypothesis for the deficit |
Focal lesion |
|
Question findings |
Too simplistic |
Facts:
Auto accident
No clear damage (no bleeding)
No recollection of accident
Alexia for five days.
“Driving in a fog”
His studio was “..now utterly gray and void of color. His canvases, the abstract color paintings he was known for, were now grayish or black and white. At this point the magnitude of his loss overwhelmed him.”
“What’s
the big deal?”
His vision had an “excessive tonal contrast.”
Over time he adapted. When I met him for the first time, he said when I asked him about his loss, that he didn’t think about it any more. “I am completely divorced from color.”
Thus it appears we have elements of a
simple loss, of a simple loss of color. Yet the man’s entire life had changed
because of this.
How can we account for this?
There is a surprisingly large literature on this (1688). Yet this onset of colorblindness was completely dismissed as hysteria 100 years ago.
What is the cause of this? You now need
to learn lots.
Overview
· Phototransduction
· Laminar structure
· Rods/cones - role in acuity, differences
· Horizontal bipolars
· Amacrine
· Ganglion output to optic nerve
· Function - log transduction of light
· Wavelength selectivity - spectrum
· Lateral inhibition
· What the retina sees .. the idea of a filter.
Retina is part of the CNS- derived from neural ectoderm

· full of melanin (absorbs light and stops scattering)
· assist with metabolism/contact photoreceptors
· phagocytosis outer segments of photoreceptors
· LIGHT TRAVELS THROUGH CELLULAR LAYERS PRIOR TO FOVEA
· Layers are thin unmyelinated fibers and pass light rather well
· Fovea has cell bodies displaced to reduce attenuation of light signal (foveola - clearest vision)
· optic disk - where fibers leave the retina- no photoreceptors leading to the blind spot

· cones - higher spatial and temporal, color (see how soon), never saturates (painful), many photons, concentrated on fovea/foveola, convergent on bipolar neurons, contributes to high spatial acuity, 55Hz
· rods - low spatial, low temporal, integrates light, monochromatic, saturates, heavy amplification, needs fewer photons (single photon), 20 times as many as cones, 12 Hz
· Rods/cones - role in acuity, densities
·
four functional parts
· outer segment - outer distal surface
· inner segment - inner proximal
· synaptic terminal
· stalk or cilium that looks like any other neurons

Figure 1 Your basic rod

Ultrastructure
· The disks float in the cell membrane of the outer segment and are full of (108) photopigments that are bound to the membrane of the disks via a humongous transmembrane protein.
· The rods have intracellular organelles while the cones’ discs remain coextensive with the membrane
· Believe it or not! The pigment molecules are oriented to catch the maximum amount of light and whatever photon gets past one disc gets caught by the one underneath.
· Resynthesis of disc (3/ hour) at the base. At the tip they are trashed by phagocytosis into the pigment epithelium.
Cascade of long chemical names which you MUST memorize until you past your qualifying exam and then happily forget forever. Except for the word cis-trans , which even I still seem to remember. Here it goes.
The transduction of light
· rods have rhodopsin consisting of retinal and opsin (in membrane).
· Retinal is a form of vitamin A and is hooked to the opsin by a Schiff base linkage (does anyone know what that is?
· A photon changes the retinal from 11-cis to all trans which means the shape changes.
· That is it for light. From here on it is chemistry.
· Retinal changes it shape and falls off from the opsin.
· Opsin is unhappy and rushes through (< 1 msec) a set of conformational changes to metarhodopsin II.
· That Schiff-base linkage within minutes vanishes because meta. II is unstable and it drifts off into the intracellular space and turns back to all-trans retinal.
· Sometime later the pigment epithelium via a special transporter transports the trans-retinal out of the outer segment into the pigment epithelium. All-trans retinal turns into all-trans retinol which is the precursor for 11 - cis. (Vitamin A deficiency).
· cone -opsin rather than rhodopsin
· BIG DIFFERENCE is there are three cone opsin leading to trichromacy color vision (hold your breath and wait).
· cGMP is the critical stuff. Its level is controlled by cGMP phosphodiesterase. The activation of pigment molecules lead to the activation of cGMP phosphodiesterase.
· Amplification - 1 rhodopsin molecule leads to hydrolysis 100 tranducin each activating a phosphodiesterase molecule which hydrolyzes1000 cGMP. Thus 1 photon activates 105 cGMP;
Figure 2
A low level view of transduction

· It changes membrane potential via cGMP gated ion channels (outer segment).
· Three cGMP molecules binds directly to the channels cytoplasmic part.
· The channel is a 63 k Dalton peptide with several membrane spanning units. cGMP opens the channel directly (not via a protein kinase). Located in outer segment primarily.
· Membrane potential primarily determined by a un-gated leak K+ current hold membrane potential at -70mV (Nernst potential) (inner segment).
· In the dark, there are high levels of cGMP opening the cGMP gated channel which allows Na+ entry leading to the dark current which moves membrane potential at -40mV. Constant flow of Na and K lead to lots of Na/K pumps.
· In the light cGMP decreases, cGMP channels close, Na current decreases, and membrane hyperpolarizes.
·

· Note increasing [Ca++] decreases cGMP via inhibition of guanylate cyclase that synthesizes cGMP from cGTP.
· [Ca++] enters with dark channel via cGMP activated ion channels
·
Thus light decreases dark current and decreases
intracellular [Ca++] which reduces inhibition of guanylate cyclase which
increases cGMP which further reopens cGMP channels depolarizing membrane.
1) Outer nuclear layer (rods/cones)
2) Outer plexiform layer (horizontal cells)
3) Inner nuclear layer (bipolar cells)
4) Inner plexiform layer (Amacrine)
5) Ganglion cell later

All
these neurons are essentially interneurons and shapes the electrical signal en
route to the optic nerve - lateral and direct pathways· Recall that photoreceptors respond to graded potentials - same for horizontal and bipolar cells. Passive transmission of activity. Look at the pictures, the processes are small so there is little spatial attenuation.
· Bipolar neurons are center surround - cones connect directly to bipolar cells
· On center bipolars are depolarized while off center are hyperpolarized
·
The surround are generated from horizontal connections
(gap connections for specialized transmission)
This is a center surround

The center is from the rod/cone while the surround is from the horizontal cell (Fig 28-6).
Glutamate is the main transmitter here. Tonically released by cone and is decreased by hyperpolarization, which has differential effects on two types of bipolar cells. Some depolarized, some hyperpolarized (thus center on or off).
Rod/cones typically depolarized by dark current (remember!) thus constantly releasing glutamate. On-center bipolars are thus constantly hyperpolarized (v-v for off center). Light reduced dark current, hyperpolarizing rod/cone, reducing glutamate, depolarizing bipolar.
One transmitter - two actions
-
On center - glutamate opens K+ selective ion channels
Off center - glutamate open Na+ channels
These synapse on the rod/cones, not the bipolars. They antagonize the response from the rod/cones. Thus activation of the surround can depolarize the horizontals, depolarizing the rod/cones which is exactly opposite what light would do.
The critical principle of lateral inhibition. NOW THIS IS IMPORTANT.
The bipolar cells make excitatory connections to the spiking ganglion neurons. Nice and simple. Depolarize a bipolar cell, depolarize the ganglion cell.


Spiking neurons - 20 morphological types, eight transmitters, little is know about role but thought to permit lateral interactions between ganglion neurons. This may lead to unusual retinal properties (e.g. orientation selective M-ganglion neurons - RARE).
· Business end of the retinal. It has fibers in the optic nerve that transmits to the lateral geniculate nucleus (LGN) via regular spikes. About 106 fibers for the entire visual image. Major compression of image.
· The properties of center surround...
· Multiple channels
· Enhancement of contrast. Zero crossing theorem of Marr[3].
·


·

Multiple channels -
M (Pa)- on/off center, large cell bodies, large dendritic arbor, large receptive field (RECEPTIVE FIELD), magnocellular stream), coarse detail
P (Pb)- on/off center, small cell bodies, small dendritic arbor, small RECEPTIVE FIELD, wavelength selective, (parvocellular stream), fine detail, color
K cells- overall light intensity
Helmholtz, Trichromacy,

· Midbrain pre-tectal area (pupillary reflex)
· Superior colliculus (eye movements) - other inputs also
· LGN
· Superchiasmatic nucleus for circadian cycle


· M=1,2 P=3,4,5,6
· Maintained receptive field organization.
· Function - setting up initial maps for rest of cortex to use.
· Don't forget also rt/left eye representation.

De Valois and Tootell


1.
magno inputs into 4Ca
2.
parvo inputs into 4Cb
3. outputs via layer 2
4. intra-cortical circuits


1. retinotopic mapping


2.
orientation tuning


3.
ocular dominance
Three different possible models- Theory!

Data
a. Proline
in one eye –horizontal section
b.
Tangential sections overlaid



Single units

· Critical ORIENTATION selectivity

· RF structure

· Orientation varies across cortex

· Modern measure of ocular dominance. (CO with TTX in eye)

· Ice cube model of cortex proposed by Hubel and Wiesel – combined orientation and ocular dominance

· What about color tuning – color opponency in primary visual cortex

· The color tuning is found in cytochrome oxidase blobs with blobs tuned to certain colors and connected to similar blocs
· No orientation tuning
·

Modification of ice-cube model by Livingstone and Hubel

· Sub-structure of v1, blobs/inter-blobs columns, maps in maps

·


·
·

·

Critical period for development of ocular dominance – suture eye
1. Direct projections from layer VI to IV
2. GABA ergic neurons
3. Larger receptive fields in layer VI
4. Smaller ones in layer IV

End stopping is cause by layer VI neurons blocking layer IV responses to longer bars

What is the functional use of end-stopping cells? Can be used for obvious line length or alternatively for measuring curvature.

1. primarily receives its inputs from V1
2. cytochrome oxidase patterns of thin and thick stripes

Figure 3 The connections amongst areas
1. thin stripes- color
2. interstripes - orientation, binocularity, color
3. thick- motion, orientation, binocularity

· what and where -> motion, depth/form, color
· What defines a visual area? - borders, representations (Van Essen)


· Putting it back together - binding problem
· Motion - middle temporal area, map of motion within retinotopic map
· (Albright), aperture problem, hierarchical underlie more complex motion
· analysis
Stndard test for MT [7]

·

·

· Color - color constancy – V4 – selective to color, not wavelength - achromatopsia
· Form - face cells – temporal lobe





Essay question 1) Anatomical feedback connections are found throughout the visual system, however little evidence as to their functional role is known. Review the electrophysiological, anatomical and behavioral literature as regards this question and suggest experiments to further test this hypothesis.
Essay question 2) Describe a particular loss of visual function that is seen with either retinal, sub-cortical or cortical damage in terms of its history. (Go back at least to the early 1900's preferably to the 1800's -- additional points will be given for older citations!). Also describe the loss of visual function in the regions involved and the etiology of the disease, Determine what high technology and expensive imaging technologies (PET, MRI, BEAM) tell us that we didn't know before in terms of the understanding of the locus of damage. Describe strategies that brain-damaged individuals can use to circumvent the difficulties. A non-inclusive list of syndromes is: stereoscopic blindness, achromatopsia, agnosia, alexia, inability to recognize faces, disconnection syndromes, motion blindness, parietal syndrome, ad nauseum.
Essay question 3) Unbelievable as it may seem, people can "see" without an occipital cortex. Research blindsight (history etc.) and use it as a vehicle to discuss the role of sub-cortical structures (LGN, other thalamic nuclei, colliculus). If you feel brave, discuss what the philosophical implications are.
Essay question 4) Another amazing fact: sight can be restored to the blind. Under certain conditions, removal of cataracts that were present from early in life result in a restoration of vision. Can these persons see? What is perception anyway?
Essay question 5) Visual Cortex is often considered to function independently of sub-cortical structures, other than the lateral geniculate nucleus. Is this a reasonable assumption? Discuss evidence for or against this idea? Provide a definitive experiment to examine this issue.
Essay question 6) Much is now known about the microcircuitry, electrophysiology and function of the retina. Choose one set of neurons (not the receptors) and discuss how the understanding of molecular and cellular details helps the understanding of their role in the computations thought to be performed in the retina. Suggest an experiment to further test this.
Siegel Readings
Kandel, Jessel& Schwartz
Chapter 28 - The retina
Chapter 29 - Central Visual Pathways
Chapter 30 - Motion Depth & Form
Chapter 31 - Color Vision
Optional reading:
Van Essen et al. Modular & hierarchical organization of extrastriate visual cortex in the macaque monkey. CSH Symposium, 1990
fdnlecture.doc
[1] http://thalamus.wustl.edu/course/eyeret.html and also http://www.yavapai.cc.az.us/division/sci_math/biology/golden/a&p/AP111.HTM , http://www.yorku.ca/faculty/academic/pkaiser/eye/toc.htm for illustrations
[2] based on chapter 28 of Kandel Jessel Schwartz
[3] http://www.cogs.susx.ac.uk/users/davidy/teachvision/vision3.html#heading2
[4] base on chapter 29 of KJS
[5] based on chapter 29 of KJS, Ferrier lecture of Hibel and Wiesel, Proc Roy Soc Lond, 1997, also Zeki Vision of the Brain, 1997 with illustrations from these texts
[6] base on chapter 30, 31 of KJS, also Zeki, ibid, CSH Symposium on Neuroscience, 1990
[7]
MT studiy taken from Gregory C. DeAngelis and William T. Newsome
Organization
of Disparity-Selective Neurons in Macaque Area MT
J. Neurosci. 1999 19: 1398-1415